PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c2_17030V3.3.p
Common NamePHYPADRAFT_172534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C3H
Protein Properties Length: 302aa    MW: 34031.5 Da    PI: 9.123
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c2_17030V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.22.7e-13192217126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yktelCr + +tG+C+y ++C+FaHg
  Pp3c2_17030V3.3.p 192 YKTELCRSWEETGHCRYAAKCQFAHG 217
                        9************************8 PP

2zf-CCCH33.19.6e-11240261425
                        ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                        +lCr + +tG C+yG rC+F+H
  Pp3c2_17030V3.3.p 240 KLCRSYTETGLCSYGKRCRFIH 261
                        79******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-18187225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-9190224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.394191219IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8191218IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-8226262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582236264IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5236263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7237262IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8240261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSFPYMQDGS GVSPPGEKLY SAYSQSILRK GRGMSEKNFE FIFSDTSSMG MKFSVGVPYS  60
STTTEEDFQE LEQESSVDSS STRCILQRKP RKGRKMLLHT PGNVCGYDPE KFGICNRSVS  120
FLNPVQALRN LQHERMHSPG INVHFRCTHR LHAPSIIRSK PAINHAGSEL PLCSPSAPSD  180
EIEHPQIKEG LYKTELCRSW EETGHCRYAA KCQFAHGNDD LRPVPRHPKY KTEEKKDQSK  240
LCRSYTETGL CSYGKRCRFI HTSGTNTQVF LESRNLEKKG SRRLSIFQQL SGAGEMPPRQ  300
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-20192263468Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001783282.10.0predicted protein
TrEMBLA9TXF90.0A9TXF9_PHYPA; Predicted protein
STRINGPP1S358_43V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-22C3H family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]